ConforFlux: Particle-Guided Trunk Repulsion for Diverse Protein Conformations
S. Suzuki, T. Amagasa
bioRxiv
Ph.D. Student
Graduate School of Systems and Information Engineering
University of Tsukuba
I am a Ph.D. student in Computer Science at the University of Tsukuba. My research focuses on protein dynamics and design, genomic language models, and deep learning for biology. I am particularly interested in conformational sampling, de novo binder design, and transformer-based approaches to biological sequence analysis.
Conformational sampling in protein structure prediction models, dynamics-driven de novo binder design, and latent space manipulation for exploring protein conformational landscapes.
Building and applying genomic foundation models such as Nucleotide Transformer and Evo to learn the regulatory grammar of genomes, enabling functional sequence prediction and rational genome design across organisms.
Applying modern deep learning techniques to diverse biological problems, bridging computational methods with experimental validation.
S. Suzuki, T. Amagasa
bioRxiv
S. Suzuki, T. Amagasa
bioRxiv
S. Suzuki, K. Horie, T. Amagasa, N. Fukuda
Plant Molecular Biology
Poster · Hawaii, USA
Poster / Forum · Yokohama, Japan
The 48th Annual Meeting of the Molecular Biology Society of Japan
Top 3% (51 selected from 1,599 entries)
Adaptyv Bio
Top 10 out of 130+ participants worldwide
158th place out of 4,189 competitors
Top 3%